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Pubblicazioni di ateneo

Found 54 results
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Journal Article
Anjum, S., S. Morganella, F. D'Angelo, A. Iavarone, and \textbfM. \ textbfCeccarelli, VEGAWES: Variational Segmentation on Whole Exome Sequencing for Copy Number Detection, , vol. 16, pp. 315, 2015.
Morganella, S., and \textbfM. \ textbfCeccarelli, "VegaMC}: A R/Bioconductor Package for Fast Downstream Analysis of Large Array Comparative Genomic Hybridization Datasets", Bioinformatics, vol. 28, no. 19, pp. 2512-2514, 2012.
Frezzetti, D., M. De Menna, P. Zoppoli, C. Guerra, A. Ferraro, AM. Bello, P. De Luca, C. Calabrese, A. Fusco, \textbfM. \ textbfCeccarelli, et al., "Upregulation of miR–21 by Ras in vivo and its role in tumor growth", Oncogene, vol. 30, pp. 275-286, 2011.
Mall, R., E. Ullah, K. Kunji, \textbfM. \ textbfCeccarelli, and H. Bensmail, "An unsupervised disease module identification technique in biological networks using novel quality metric based on connectivity, conductance and modularity", F1000Research, vol. 7, 2018.
Sabatino, L., A. Fucci, M. Pancione, V. Carafa, A. Nebbioso, C. Pistore, F. Babbio, C. Votino, C. Laudanna, \textbfM. \ textbfCeccarelli, et al., "UHRF1} coordinates peroxisome proliferator activated receptor gamma (PPARG) epigenetic silencing and mediates colorectal cancer progression", Oncogene, vol. 31, pp. 5061–-5072, 2012.
Singh, D., J. Minhow Chan, P. Zoppoli, F. Niola, R. Sullivan, A. Castano, E. Minwei Liu, J. Reichel, P. Porrati, S. Pellegatta, et al., "Transforming Fusions of FGFR and TACC Genes in Human Glioblastoma", Science, vol. 337, no. 6099, pp. 1231-5, 2012.
Cuomo, D., I. Porreca, \textbfM. \ textbfCeccarelli, D. W. Threadgill, W. T. Barrington, A. Petriella, F. D'Angelo, G. Cobellis, F. De Stefano, M. N. D'Agostino, et al., "Transcriptional landscape of mouse-aged ovaries reveals a unique set of non-coding RNAs associated with physiological and environmental ovarian dysfunctions", Cell death discovery, vol. 4, no. 1: Nature Publishing Group, pp. 112, 2018.
Zotti, T., A. Uva, A. Ferravante, M. Vessichelli, I. Scudiero, \textbfM. \ textbfCeccarelli, P. Vito, and R.. Stilo, "TRAF7} promotes K29-linked polyubiquitination of IKK$\gamma$/nemo and p65/RELA and represses NF-k$\beta$ activation", Journal of Biological Bhemistry, vol. 286, no. 26, pp. 22924-33, 2011.
Simeone, I., W. Hendrickx, L. Miller, H. Bensmail, E. Wang, F. Marincola, \textbfM. \ textbfCeccarelli, and D. Bedognetti, "Toward the identification of genetic determinants of breast cancer immune responsiveness", Journal for immunotherapy of cancer, vol. 3, no. Suppl 1: BioMed Central Ltd, pp. P1, 2015.
Silva, T. Chedraoui, A. Colaprico, C. Olsen, T. M. Malta, G. Bontempi, \textbfM. \ textbfCeccarelli, B. P. Berman, and H. Noushmehr, "TCGAbiolinksGUI: A graphical user interface to analyze cancer molecular and clinical data", F1000Research, vol. 7, 2018.
Colaprico, A., T. C. Silva, C. Olsen, L. Garofano, C. Cava, D. Garolini, T. Sabedot, T. Malta, S. M. Pagnotta, I. Castiglioni, et al., "TCGAbiolinks: An R/Bioconductor package for integrative analysis of TCGA data", Nucleic Acid Research, vol. 44, no. 8, pp. e71, 2016.
Silva, T. C., A. Colaprico, C. Olsen, F. D'Angelo, G. Bontempi, \textbfM. \ textbfCeccarelli, and H. Noushmehr, "TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages", F1000Research, vol. 5, 2016.
Remo, A., I. Simeone, M. Pancione, P. Parcesepe, P. Finetti, L. Cerulo Hal Bensmail, D. Birnbaum, S. J. Van Laere, V. Colantuoni, F. Bonetti, et al., Systems biology analysis reveals NFAT5 as a novel biomarker and master regulator of Inflammatory Breast Cancer, , vol. 13, pp. 138, 2015.
Porreca, I., L. Ulloa Severino, F. D'Angelo, D. Cuomo, \textbfM. \ textbfCeccarelli, L. Altucci, E. Amendola, A. Nebbioso, M. Mallardo, M. De Felice, et al., "Stockpile of Slight Transcriptomic Changes Determines the Indirect Genotoxicity of Low-Dose BPA in Thyroid Cells", PloS one, vol. 11, no. 3: Public Library of Science, pp. e0151618, 2016.
De Marco, C., C. Laudanna, N. Rinaldo, D. Mendes Oliveira, M. Ravo, A. Weisz, \textbfM. \ textbfCeccarelli, E. Caira, A. Rizzuto, P. Zoppoli, et al., "Specific gene expression signatures induced by the multiple oncogenic alterations that occur within the PTEN/PI3K/AKT pathway in lung cancer", PloS one, vol. 12, no. 6: Public Library of Science, pp. e0178865, 2017.
Yuan, J., H. Mendes Levitin, V. Frattini, E. C. Bush, D. M. Boyett, J. Samanamud, \textbfM. \ textbfCeccarelli, A. Dovas, G. Zanazzi, P. Canoll, et al., "Single-cell transcriptome analysis of lineage diversity in high-grade glioma", Genome medicine, vol. 10, no. 1: BioMed Central, pp. 57, 2018.
Scrima, M., C. De Marco, F. Fabiani, R. Franco, G. Pirozzi, G. Rocco, M. Ravo, A. Weisz, P. Zoppoli, \textbfM. \ textbfCeccarelli, et al., "Signalling networks associated with AKT activation in Non-Small Cell Lung Cancer (NSCLC): new insights on the role of phosphatydil-inositol-3 kinase", PlosOne, vol. 7, no. 2, pp. e30427, 2012.
Monaco, G., B. Lee, W. Xu, S. Mustafah, Y. Yi Hwang, C. Carré, N. Burdin, L. Visan, \textbfM. \ textbfCeccarelli, M. Poidinger, et al., "RNA-Seq Signatures Normalized by mRNA Abundance Allow Absolute Deconvolution of Human Immune Cell Types", Cell reports, vol. 26, no. 6: Elsevier, pp. 1627–1640, 2019.
Mall, R., L. Cerulo, L. Garofano, V. Frattini, K. Kunji, H. Bensmail, T. Sabedot, H. Noushmehr, A. Lasorella, A. Iavarone, et al., "RGBM: Regularized Gradient Boosting Machines For The Identification of Transcriptional Regulators Of Discrete Glioma Subtypes", Nucleic Acid Research, vol. 46, no. 7: Cold Spring Harbor Labs Journals, pp. e39, 2018.
Tagliaferri, D., M. Teresa De Angelis, N. Antonino Russo, M. Marotta, \textbfM. \ textbfCeccarelli, L. Del Vecchio, M. De Felice, and G. Falco, "Retinoic Acid Specifically Enhances Embryonic Stem Cell Metastate Marked by Zscan4", PloS one, vol. 11, no. 2: Public Library of Science, pp. e0147683, 2016.
Ciccarelli, M., R. Finelli, N. Rivera, G. Santulli, R. Izzo, N. De Luca, F. Rozza, \textbfM. \ textbfCeccarelli, S. Pagnotta, F. Uliano, et al., "The possible role of chromosome X variability in Hypertensive familiarity", Journal of Human Hypertension, 2016.
Porreca, I., F. D'Angelo, L. De Franceschi, A. Mattè, \textbfM. \ textbfCeccarelli, A. Iolascon, A. Zamò, F. Russo, M. Ravo, R. Tarallo, et al., "Pesticide toxicogenomics across scales: in vitro transcriptome predicts mechanisms and outcomes of exposure in vivo", Scientific Reports, vol. 6, pp. 38131, Dec, 2016.
De Angelis, M., F. Russo, F. D'Angelo, L. Del Vecchio, \textbfM. \ textbfCeccarelli, M. De Felice, and G. Falco, Novel pancreas organogenesis markers refine the pancreatic differentiation roadmap of Embryonic Stem cells, , vol. 10, no. 2, pp. 269-279, 2014.
Cerulo, L., V. Paduano, Z. Pietro, and \textbfM. \ textbfCeccarelli, "A negative selection heuristic to predict new transcriptional targets", BMC Bioinformatics, vol. 14, no. S1, 2013.
textbfCeccarelli, \textbfM. \, F. P. Barthel, T. M. Malta, T. S. Sabedotand, S. R. Salama, B. A. Murray, O. Morozova, Y. Newton, A. Radenbaugh, S. M. Pagnotta, et al., "Molecular profiling reveals biologically discrete subsets and pathways of progression in diffuse glioma", Cell, vol. 164, no. 3, pp. 550-563, 2016.