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Pubblicazioni di ateneo

Found 54 results
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Journal Article
Cerulo, L., M. Di Penta, A. Bacchelli, \textbfM. \ textbfCeccarelli, and G. Canfora, "Irish: A Hidden Markov Model to detect coded information islands in free text", Science of Computer Programming, vol. 105: Elsevier, pp. 26–43, 2015.
Paokanta, P., N. Harnpornchai, N. Chakpitak, S. Srichairatanakool, and \textbfM. \ textbfCeccarelli, "Knowledge and Data Engineering: Fuzzy Approach and Genetic Algorithms for Clustering Beta-Thalassemia of Knowledge Based Diagnosis Decision Support System", ICIC Express Letters, vol. 7, no. 2, pp. 479-484, 2013.
Silvestri, E., D. Glinni, F. Cioffi, M. Moreno, A. Lombardi, P. de Lange, R. Senese, \textbfM. \ textbfCeccarelli, A. Maria Salzano, A. Scaloni, et al., "Metabolic effects of the iodothyronine functional analogue TRC150094 on the liver and skeletal muscle of high-fat diet fed overweight rats: an integrated proteomic study", Molecular Biosystems, vol. 8, no. 7, pp. 1987-2000, 2012.
Frattini, V., S. M. Pagnotta, , J. J. Fan, M. V. Russo, S. Bae Lee, L. Garofano, J. Zhang, P. Shi, G. Lewis, et al., "A metabolic function of FGFR3-TACC3 gene fusions in cancer", Nature, vol. 553: Macmillan Publishers Limited, part of Springer Nature. All rights reserved. SN -, pp. 222-227, 2018.
textbfCeccarelli, \textbfM. \, F. P. Barthel, T. M. Malta, T. S. Sabedotand, S. R. Salama, B. A. Murray, O. Morozova, Y. Newton, A. Radenbaugh, S. M. Pagnotta, et al., "Molecular profiling reveals biologically discrete subsets and pathways of progression in diffuse glioma", Cell, vol. 164, no. 3, pp. 550-563, 2016.
Cerulo, L., V. Paduano, Z. Pietro, and \textbfM. \ textbfCeccarelli, "A negative selection heuristic to predict new transcriptional targets", BMC Bioinformatics, vol. 14, no. S1, 2013.
De Angelis, M., F. Russo, F. D'Angelo, L. Del Vecchio, \textbfM. \ textbfCeccarelli, M. De Felice, and G. Falco, Novel pancreas organogenesis markers refine the pancreatic differentiation roadmap of Embryonic Stem cells, , vol. 10, no. 2, pp. 269-279, 2014.
Porreca, I., F. D'Angelo, L. De Franceschi, A. Mattè, \textbfM. \ textbfCeccarelli, A. Iolascon, A. Zamò, F. Russo, M. Ravo, R. Tarallo, et al., "Pesticide toxicogenomics across scales: in vitro transcriptome predicts mechanisms and outcomes of exposure in vivo", Scientific Reports, vol. 6, pp. 38131, Dec, 2016.
Ciccarelli, M., R. Finelli, N. Rivera, G. Santulli, R. Izzo, N. De Luca, F. Rozza, \textbfM. \ textbfCeccarelli, S. Pagnotta, F. Uliano, et al., "The possible role of chromosome X variability in Hypertensive familiarity", Journal of Human Hypertension, 2016.
Tagliaferri, D., M. Teresa De Angelis, N. Antonino Russo, M. Marotta, \textbfM. \ textbfCeccarelli, L. Del Vecchio, M. De Felice, and G. Falco, "Retinoic Acid Specifically Enhances Embryonic Stem Cell Metastate Marked by Zscan4", PloS one, vol. 11, no. 2: Public Library of Science, pp. e0147683, 2016.
Mall, R., L. Cerulo, L. Garofano, V. Frattini, K. Kunji, H. Bensmail, T. Sabedot, H. Noushmehr, A. Lasorella, A. Iavarone, et al., "RGBM: Regularized Gradient Boosting Machines For The Identification of Transcriptional Regulators Of Discrete Glioma Subtypes", Nucleic Acid Research, vol. 46, no. 7: Cold Spring Harbor Labs Journals, pp. e39, 2018.
Monaco, G., B. Lee, W. Xu, S. Mustafah, Y. Yi Hwang, C. Carré, N. Burdin, L. Visan, \textbfM. \ textbfCeccarelli, M. Poidinger, et al., "RNA-Seq Signatures Normalized by mRNA Abundance Allow Absolute Deconvolution of Human Immune Cell Types", Cell reports, vol. 26, no. 6: Elsevier, pp. 1627–1640, 2019.
Scrima, M., C. De Marco, F. Fabiani, R. Franco, G. Pirozzi, G. Rocco, M. Ravo, A. Weisz, P. Zoppoli, \textbfM. \ textbfCeccarelli, et al., "Signalling networks associated with AKT activation in Non-Small Cell Lung Cancer (NSCLC): new insights on the role of phosphatydil-inositol-3 kinase", PlosOne, vol. 7, no. 2, pp. e30427, 2012.
Yuan, J., H. Mendes Levitin, V. Frattini, E. C. Bush, D. M. Boyett, J. Samanamud, \textbfM. \ textbfCeccarelli, A. Dovas, G. Zanazzi, P. Canoll, et al., "Single-cell transcriptome analysis of lineage diversity in high-grade glioma", Genome medicine, vol. 10, no. 1: BioMed Central, pp. 57, 2018.
De Marco, C., C. Laudanna, N. Rinaldo, D. Mendes Oliveira, M. Ravo, A. Weisz, \textbfM. \ textbfCeccarelli, E. Caira, A. Rizzuto, P. Zoppoli, et al., "Specific gene expression signatures induced by the multiple oncogenic alterations that occur within the PTEN/PI3K/AKT pathway in lung cancer", PloS one, vol. 12, no. 6: Public Library of Science, pp. e0178865, 2017.
Porreca, I., L. Ulloa Severino, F. D'Angelo, D. Cuomo, \textbfM. \ textbfCeccarelli, L. Altucci, E. Amendola, A. Nebbioso, M. Mallardo, M. De Felice, et al., "Stockpile of Slight Transcriptomic Changes Determines the Indirect Genotoxicity of Low-Dose BPA in Thyroid Cells", PloS one, vol. 11, no. 3: Public Library of Science, pp. e0151618, 2016.
Remo, A., I. Simeone, M. Pancione, P. Parcesepe, P. Finetti, L. Cerulo Hal Bensmail, D. Birnbaum, S. J. Van Laere, V. Colantuoni, F. Bonetti, et al., Systems biology analysis reveals NFAT5 as a novel biomarker and master regulator of Inflammatory Breast Cancer, , vol. 13, pp. 138, 2015.
Silva, T. C., A. Colaprico, C. Olsen, F. D'Angelo, G. Bontempi, \textbfM. \ textbfCeccarelli, and H. Noushmehr, "TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages", F1000Research, vol. 5, 2016.
Colaprico, A., T. C. Silva, C. Olsen, L. Garofano, C. Cava, D. Garolini, T. Sabedot, T. Malta, S. M. Pagnotta, I. Castiglioni, et al., "TCGAbiolinks: An R/Bioconductor package for integrative analysis of TCGA data", Nucleic Acid Research, vol. 44, no. 8, pp. e71, 2016.
Silva, T. Chedraoui, A. Colaprico, C. Olsen, T. M. Malta, G. Bontempi, \textbfM. \ textbfCeccarelli, B. P. Berman, and H. Noushmehr, "TCGAbiolinksGUI: A graphical user interface to analyze cancer molecular and clinical data", F1000Research, vol. 7, 2018.
Simeone, I., W. Hendrickx, L. Miller, H. Bensmail, E. Wang, F. Marincola, \textbfM. \ textbfCeccarelli, and D. Bedognetti, "Toward the identification of genetic determinants of breast cancer immune responsiveness", Journal for immunotherapy of cancer, vol. 3, no. Suppl 1: BioMed Central Ltd, pp. P1, 2015.
Zotti, T., A. Uva, A. Ferravante, M. Vessichelli, I. Scudiero, \textbfM. \ textbfCeccarelli, P. Vito, and R.. Stilo, "TRAF7} promotes K29-linked polyubiquitination of IKK$\gamma$/nemo and p65/RELA and represses NF-k$\beta$ activation", Journal of Biological Bhemistry, vol. 286, no. 26, pp. 22924-33, 2011.
Cuomo, D., I. Porreca, \textbfM. \ textbfCeccarelli, D. W. Threadgill, W. T. Barrington, A. Petriella, F. D'Angelo, G. Cobellis, F. De Stefano, M. N. D'Agostino, et al., "Transcriptional landscape of mouse-aged ovaries reveals a unique set of non-coding RNAs associated with physiological and environmental ovarian dysfunctions", Cell death discovery, vol. 4, no. 1: Nature Publishing Group, pp. 112, 2018.
Singh, D., J. Minhow Chan, P. Zoppoli, F. Niola, R. Sullivan, A. Castano, E. Minwei Liu, J. Reichel, P. Porrati, S. Pellegatta, et al., "Transforming Fusions of FGFR and TACC Genes in Human Glioblastoma", Science, vol. 337, no. 6099, pp. 1231-5, 2012.
Sabatino, L., A. Fucci, M. Pancione, V. Carafa, A. Nebbioso, C. Pistore, F. Babbio, C. Votino, C. Laudanna, \textbfM. \ textbfCeccarelli, et al., "UHRF1} coordinates peroxisome proliferator activated receptor gamma (PPARG) epigenetic silencing and mediates colorectal cancer progression", Oncogene, vol. 31, pp. 5061–-5072, 2012.